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- Dioscorea transversa (Native Yam)
- Diospyros australis (Black Plum)
- Diospyros ellipticifolia f. australiensis (was Diospyros ellipticifolius var ebenus (was Diospyros major) (Shiny-leaved Ebony)
- Diospyros fasciculosa (Grey Ebony)
- Diospyros geminata (Scaly Ebony)
- Diospyros pentamera (Myrtle Ebony)
- Diplocyclos palmatus (Native Bryony)
- Diploglottis australis (Diploglottis cunninghamii) (Native Tamarind)
- Diploglottis campbellii (Small-leaved tamarind)
- Dipodium hamiltonianum (Yellow Hyacinth Orchid)
- dipodium punctatum (Hyacinth Orchid)
- Dipodium variegatum (Slender Hyacinth Orchid)
- Dissiliaria baloghioides (Hauer, Lancewood, Currungal, Blackheart)
- Diuris alba (White Donkey Orchid)
- Diuris unica (Yellow Double Tails)
- Dockrillia linguiformis (Tongue Orchid, Tick Orchid)
- Dockrillia schoenina (Common Pencil Orchid)
- Dockrillia teretifolia (Rat\\\'s Tail Orchid)
- Dodonaea triquetra (Forest Hop Bush)
- Dodonea viscosa (Sticky Hop Bush)
- Doodia caudata (Small Rasp Fern)
- Doodia heterophylla
- Drosera binata (Fork leafed sundew)
- Drosera burmannii
- Drosera peltata (White sundrew)
- Drosera pygmaea (Pygmy Sundew)
- Drosera spatulata var. spathulata (Common sundew, Spoon-leaf Sundew)
- Drymaria cordata subsp. diandra (Sticky Weed, Tropical Chick Weed)
- Drynaria rigidula (Basket Fern)
- Drypetes deplanchei (Drypetes australasica) (Yellow Tulip)